PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g042953m
Common NameCISIN_1g042953mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 468aa    MW: 53032 Da    PI: 8.6027
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g042953mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.7e-16311131098
                        HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        ++  ++l +p k a++    k+ ++t++l+ +sg +W v +  + ++ + +++ GW eFvk++ L e+D++ Fk++g s f   v +f+
  orange1.1g042953m  31 TGFDHQLAIPEKVARNLR--KKLPVTVSLKAPSGFTWVVGI--TTRDHTLYFSHGWPEFVKDHFLGENDILFFKYNGGSHF--DVLMFD 113
                        566789********7666..4599*****************..999999**************************998888..666665 PP

2B341.22.9e-13353442194
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                        f  v+ p +v k+  + +p + ++++    +++  +++   ++ ++W  +++++k +++  l++GWk+F+ +n+L+e D++vF  d+  +++
  orange1.1g042953m 353 FTVVMRPTHVYKRFYMAIPASWMSKYlT-LENQ--DVI-LRLNEKTWITRFQFCKPRCSGGLSGGWKNFAVDNHLDEFDVCVFGPDN-PGTK 439
                        778999********************53.3344..455.45688*********99999999***********************764.5555 PP

                        .EE CS
                 B3  92 lvv 94 
                        ++v
  orange1.1g042953m 440 PMV 442
                        554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.59E-1921113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.36622115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-1925113IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.6E-925115IPR003340B3 DNA binding domain
CDDcd100171.20E-1630113No hitNo description
PfamPF023624.3E-1331110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-18348449IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-17351441IPR015300DNA-binding pseudobarrel domain
CDDcd100178.35E-18352449No hitNo description
PROSITE profilePS5086310.87353451IPR003340B3 DNA binding domain
SMARTSM010191.3E-10353451IPR003340B3 DNA binding domain
PfamPF023628.3E-12353442IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MGEACNECRS WEEEIYWNHF QCIHFIQYLH TGFDHQLAIP EKVARNLRKK LPVTVSLKAP  60
SGFTWVVGIT TRDHTLYFSH GWPEFVKDHF LGENDILFFK YNGGSHFDVL MFDGQSQCEK  120
AVSYFVKKCG HTEHSNRRET RRKIRETSVE GIPNSSHCDV DITPPEKGSD DDINKIPVGQ  180
PIVTPASSKR IRRDDTSNEF VRSRRNSYFV KKRKHKDHGS VSQTKRRIGE SCVEGIPNSS  240
DCDVDVTLPE KASNDEINKI PVGEPIVTLD SSKRIWRVDS SNELAHTRRS SRSKTVSTNF  300
AEMLKTKTGD EQTIINGNVA LSPPFTSNRR PVTQDEKNNA LLMAQAVSTT DSFTVVMRPT  360
HVYKRFYMAI PASWMSKYLT LENQDVILRL NEKTWITRFQ FCKPRCSGGL SGGWKNFAVD  420
NHLDEFDVCV FGPDNPGTKP MVLNVSIFRV VNAVVPLTQV APASLQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1432645021142B3 domain-containing transcription factor VRN
4i1k_B4e-1432645021142B3 domain-containing transcription factor VRN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434884.10.0hypothetical protein CICLE_v10001063mg
TrEMBLA0A067H9F60.0A0A067H9F6_CITSI; Uncharacterized protein
TrEMBLV4V7P70.0V4V7P7_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-48B3 family protein